A
A-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor, 242-243, 245, 253
Adenosine diphosphate (ADP), 171
Adenosine triphosphate (ATP), 171, 199, 204
ADI method, 197, 207, 216
Algorithms, 43-44, 61-62, 137, 169, 174, 212. See also Reverse engineering REVEAL algorithm
Alternating direction implicit (ADI) method, 197, 207, 216
AMBER force field, 166, 177
Amino acids, 7-8, 166, 175
AMPA receptor, 242-243, 245, 253
Anaphase-promoting complex (APC), 290
Anterior-posterior (A-P) axis, 102-104, 107
Apparent diffusion, 191, 205
Approximating dynamics, 40
Artificial neural networks (ANN), 41
Atomic-level simulation and biomacromolecules modeling
biological problems, 174-184
binding energy calculation, 179-182
enzyme reaction mechanisms, 175-177
human rhinovirus drug reaction, 177-179
overview, 174-175
quantitative structure-activity relationship, 182-184
future research, 183-184
molecular dynamics, 163-174
force field, 161, 164-168
methods, 168-174
overview, 163-166
quantum mechanics and, 161, 163-164
solvents and, effect of, 167-168
overview, 161-163
Averaged equations
Hebbian learning, 318-319
neural network from biophysics, 319-320
oscillators, weakly coupled, 320-322
overview, 317-318
TABLE OF CONTENTS 
