Text Mining for Biology and Biomedicine

| ACL | Association for Computational Linguistics | |
| ACM | Association for Computing Machinery | |
| ADJP-PRD | predicate adjectival phrase | |
| API | application programming interface | |
| ARGH | acronym resolving general heuristics | |
| AROC | area under the receiver operator characteristic curve | |
| ATM | automatic terminology management | |
| ATR | automatic term recognition | |
| ATRACT | Automatic Term Recognition and Clustering of Terms | |
| ATS | automatic term structuring | |
| BioCreAtIvE | Critical Assessment of Information Extraction in Biology | |
| BMC | BioMed Central | |
| CAMDA | Critical Assessment of Microarray Data Analysis | |
| CAPRI | Critical Assessment of PRediction of Interactions | |
| CASP | Critical Assessment of Protein Structure Prediction | |
| CC | comments | |
| CCG | Combinatory Categorical Grammar | |
| COLING | International Conference on Computational Linguistics | |
| CR | coreference | |
| CSS | cascading style sheet | |
| CVS | Concurrent Versions System | |
| DCG | Definite Clause Grammar | |
| DL | description logic | |
| DMT | Dictionary of Medical Terms | |
| DRT | Discourse Representation Theory | |
| DTD | document type definition | |
| EBI | European Bioinformatics Institute | |
| EMPathIE | Enzyme and Metabolic Pathways Information Extraction | |
| FMA | Foundational Model of Anatomy | |
| GASP | Genome Annotation Assessment Project | |
| GAW | Genome Access Workshop | |
| GEISHA | Gene Expression Information System for Human Analysis | |
| GeneRIF | Gene Reference into Function | |
| GENIA | Gene Expression Information System for Human Analysis | |
| GO | Gene Ontology | |
| GOA | Gene Ontology Annotation | |
| HGNC | Human Gene Nomenclature Committee | |
| HMM | hidden Markov model | |
| HPSG | Head-driven Phrase Structure Grammar | |
| HUGO | Human Genome Organization | |
| ICD | International Classification of Diseases | |
| IDE | integrated development environment | |
| IDF | inverse... |