Text Mining for Biology and Biomedicine

Acronyms

ACL

Association for Computational Linguistics

ACM

Association for Computing Machinery

ADJP-PRD

predicate adjectival phrase

API

application programming interface

ARGH

acronym resolving general heuristics

AROC

area under the receiver operator characteristic curve

ATM

automatic terminology management

ATR

automatic term recognition

ATRACT

Automatic Term Recognition and Clustering of Terms

ATS

automatic term structuring

BioCreAtIvE

Critical Assessment of Information Extraction in Biology

BMC

BioMed Central

CAMDA

Critical Assessment of Microarray Data Analysis

CAPRI

Critical Assessment of PRediction of Interactions

CASP

Critical Assessment of Protein Structure Prediction

CC

comments

CCG

Combinatory Categorical Grammar

COLING

International Conference on Computational Linguistics

CR

coreference

CSS

cascading style sheet

CVS

Concurrent Versions System

DCG

Definite Clause Grammar

DL

description logic

DMT

Dictionary of Medical Terms

DRT

Discourse Representation Theory

DTD

document type definition

EBI

European Bioinformatics Institute

EMPathIE

Enzyme and Metabolic Pathways Information Extraction

FMA

Foundational Model of Anatomy

GASP

Genome Annotation Assessment Project

GAW

Genome Access Workshop

GEISHA

Gene Expression Information System for Human Analysis

GeneRIF

Gene Reference into Function

GENIA

Gene Expression Information System for Human Analysis

GO

Gene Ontology

GOA

Gene Ontology Annotation

HGNC

Human Gene Nomenclature Committee

HMM

hidden Markov model

HPSG

Head-driven Phrase Structure Grammar

HUGO

Human Genome Organization

ICD

International Classification of Diseases

IDE

integrated development environment

IDF

inverse...

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